C/igraph 0.9.9

Announcements
1

C/igraph 0.9.9 is now released.

The source can be obtained from the GitHub releases page, as usual.

This is a bugfix release, focusing mainly on community detection and visualization functions. The changes are detailed below.

Changed

  • igraph_community_walktrap() now uses double precision floating point operations internally instead of single precision.
  • In igraph_community_leiden(), the nb_clusters output parameter is now optional (i.e. it can be NULL).
  • igraph_read_graph_graphml() no longer attempts to temporarily set the C locale, and will therefore not work correctly if the current locale uses a decimal comma.

Fixed

  • igraph_community_walktrap() would return an invalid modularity vector when the merges matrix was not requested.
  • igraph_community_walktrap() would return a modularity vector that was too long for disconnected graphs. This would cause a failure in some weighted graphs when the membership vector was requested.
  • igraph_community_walktrap() now checks the weight vector: only non-negative weights are accepted, and all vertices must have non-zero strength.
  • igraph_community_walktrap() now returns a modularity score of NaN for graphs with no edges.
  • igraph_community_fast_greedy() now returns a modularity score of NaN for graphs with no edges.
  • igraph_community_edge_betweenness() now returns a modularity vector with a single NaN entry for graph with no edges. Previously it returned a zero-length vector.
  • igraph_community_leading_eigenvector() does not ignore non-ARPACK-related errors from igraph_arpack_rssolve() any more.
  • igraph_preference_game() now works correctly when fixed_size is true and type_dist is not given; earlier versions had a bug where more than half of the vertices mistakenly ended up in group 0.
  • Fixed a memory leak in igraph_hrg_fit() when using start=1.
  • igraph_write_graph_dot() now outputs NaN values unchanged.
  • igraph_write_graph_dot() no longer produces invalid DOT files when empty string attributes are present.
  • igraph_layout_fruchterman_reingold() and igraph_layout_kamada_kawai(), as well as their 3D versions, did not respect vertex coordinate bounds (xmin, xmax, etc.) when minimum values were large or maximum values were small. This is now fixed.
  • The initial coordinates of the Kamada-Kawai layout (igraph_layout_kamada_kawai() and igraph_layout_kamada_kawai_3d()) are chosen to be more in line with the original publication, improving the stability of the result. See issue #963. This changes the output of the function for the same graph, compared with previous versions. To obtain the same layout, initialize coordinates with igraph_layout_circle() (in 2D) or igraph_layout_sphere() (in 3D).
  • Improved numerical stability in Kamada-Kawai layout.
  • Corrected a problem in the calculation of displacements in igraph_layout_fruchterman_reingold() and its 3D version. This fixes using the “grid” variant of the algorithm on disconnected graphs.
  • igraph_sumtree_search() would consider search intervals open on the left and closed on the right, contrary to the documentation. This is now corrected to closed on the left and open on the right. In some cases this lead to a zero-weight element being returned for a zero search value. See issue #2080.

Other

  • Documentation improvements.