Hello, everyone
I have been trying to install the igraph
library in Ubuntu 20.04 but I get this error:
gfortran -fno-optimize-sibling-calls -fvisibility=hidden -fpic -g -O2 -c vendor/arpack/dgetv0.f -o vendor/arpack/dgetv0.o
Inconsistency detected by ld.so: dl-call-libc-early-init.c: 37: _dl_call_libc_early_init: Assertion `sym != NULL' failed!
make: *** [/opt/R/4.2.2/lib/R/etc/Makeconf:192: vendor/arpack/dgetv0.o] Error 127
ERROR: compilation failed for package ‘igraph’
I think it’s an issue with the fortran compiler because I got the same error with other libraries such as mclust
:
gfortran -fno-optimize-sibling-calls -fpic -g -O2 -c dmvnorm.f -o dmvnorm.o
Inconsistency detected by ld.so: dl-call-libc-early-init.c: 37: _dl_call_libc_early_init: Assertion `sym != NULL' failed!
make: *** [/opt/R/4.2.2/lib/R/etc/Makeconf:192: dmvnorm.o] Error 127
ERROR: compilation failed for package ‘mclust’
I have gfortran installed on my machine and also all the dependencies: (gfortran --version
)
GNU Fortran (Homebrew GCC 12.2.0) 12.2.0
Copyright (C) 2022 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
My gcc version is: (gcc --version
)
gcc (Ubuntu 9.4.0-1ubuntu1~20.04.1) 9.4.0
Copyright (C) 2019 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
Mi session info is:
R version 4.2.2 (2022-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 20.04.6 LTS
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
locale:
[1] LC_CTYPE=es_MX.UTF-8 LC_NUMERIC=C
[3] LC_TIME=es_MX.UTF-8 LC_COLLATE=es_MX.UTF-8
[5] LC_MONETARY=es_MX.UTF-8 LC_MESSAGES=es_MX.UTF-8
[7] LC_PAPER=es_MX.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=es_MX.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] compiler_4.2.2 tools_4.2.2
Thank you in advance for your help!
I tried also to install the igraph
library directly from GitHub using devtools
package devtools::install_github("igraph/rigraph")
but also it didn’t work. I saw this messages I think they could be related to the error:
checking whether the compiler supports GNU Fortran... no
checking whether gfortran accepts -g... no